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Protein Folding Disorders Of The Central Nervous System

Protein Folding Disorders Of The Central Nervous System

Ghiso Jorge A | Rostagno Agueda A

(2017)

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Table of Contents

Section Title Page Action Price
Contents xi
Preface v
List of Contributors vii
List of Figures xv
List of Tables xix
Chapter 1 Misfolding, Aggregation, and Amyloid Formation: The Dark Side of Proteins 1
1.1 Introduction 1
1.2 Molecules associated with extra- and intracellular deposits of misfolded proteins 3
1.3 Protein folding and misfolding: Gauging the nature of the pathogenic species 7
1.4 Modulation of fibril formation: Lessons from cerebral amyloidosis 10
1.4.1 Mutations 11
1.4.2 Protein concentration: Effect of enhanced synthesis versus downregulated clearance 13
1.4.3 Acidic pH 15
1.4.4 Presence of metal ions 17
1.4.5 Post-translational modifications 17
1.5 Mechanisms of disease associated with protein misfolding 19
1.5.1 Formation of ion channel-like structures 19
1.5.2 Induction of apoptotic cell death mechanisms 20
1.5.3 Mitochondrial dysfunction and oxidative stress 21
1.5.4 Inflammation-mediated pathways 22
1.6 Concluding remarks 23
Acknowledgments 24
References 24
Chapter 2 Oligomers at the Synapse: Synaptic Dysfunction and Neurodegeneration 33
2.1 Introduction 33
2.2 Mechanisms of oligomer toxicity are related to protein conformation and misfolding 34
2.3 Protein oligomers that interfere with synaptic function and the disorders they cause 36
2.3.1 Alpha synuclein 36
2.3.2 Tau 38
2.3.3 Amyloid beta 40
2.3.4 BRI2 42
2.3.5 Huntingtin 44
2.4 Other oligomeric proteins implicated in neurodegenerative disease 46
2.5 A case study of one mechanism by which oligomers disrupt synaptic function: AβO interference with zinc modulation of neurotransmission 47
2.6 Conclusion 49
Acknowledgment 49
References 49
Chapter 3 Prion-like Protein Seeding and the Pathobiology of Alzheimer’s Disease 57
3.1 Alzheimer’s disease (AD) and the amyloid (Aβ) cascade hypothesis 57
3.1.1 Aβ plaque load and dementia 59
3.1.2 Tauopathy and dementia 60
3.1.3 Clinical trials 61
3.1.4 Animal models and AD 62
3.1.5 Complexity 63
3.2 The prion paradigm 65
3.3 The prion paradigm and AD 67
3.3.1 Similarities between Aβ seeds and PrP-prions 67
3.3.2 Evidence for the prion-like seeding of Aβ in humans 69
3.3.3 Similarities between tau seeds and PrP-prions 70
3.4 Wide range of prion-like mechanisms 71
Acknowledgments 72
References 72
Chapter 4 The Tau Misfolding Pathway to Dementia 83
4.1 Introduction to tauopathies 83
4.2 Microtubule-associated protein (MAP) tau: Isoforms and normal physiology 84
4.3 Post-translational modifications of tau and the implications in creating a toxic molecule 85
4.3.1 Tau phosphorylation 86
4.3.2 Acetylation 88
4.3.3 Ubiquitination and protein degradation 89
4.3.4 Proteolysis of tau 90
4.4 Tau: Normal biological function and pathological gain of function 91
4.4.1 Microtubules and tau in AD 91
4.4.2 AD P-tau has a prion-like behavior 91
4.4.3 Tau self-assembly and “AD P-tau-like” protein behavior is induced by hyperphosphorylation 92
4.4.4 Pseudophosphorylation of tau as a means to study toxic gain of function 93
4.4.5 Toxic gain of function observed in a tauopathy models 96
4.5 Effects of tau propagation on cellular function and AD pathology 96
4.5.1 Tau and mitochondria 96
4.5.2 Tau in the nucleus 98
4.6 Conclusions 99
References 101
Chapter 5 The Biology and Pathobiology of α-Synuclein 109
5.1 Introduction 109
5.2 Structure, misfolding, and aggregation 111
5.3 Membrane binding and cellular function 116
5.4 α-Syn proteostasis: proteasome, autophagy, and lysosomal pathways 117
5.5 Prion-like properties of α-syn 118
5.6 In vivo modeling of synucleinopathies 122
5.7 Concluding remarks 123
References 123
Chapter 6 Impact of Loss of Proteostasis on Central Nervous System Disorders 131
6.1 Introduction 131
6.2 Ubiquitin-proteasome system 132
6.3 Autophagy-lysosome pathway 138
6.4 Molecular chaperones 141
6.5 Unfolded protein response 146
6.6 Concluding remarks and perspectives 148
Acknowledgments 152
References 152
Chapter 7 Protein Misfolding and Mitochondrial Dysfunction in Amyotrophic Lateral Sclerosis 163
7.1 Introduction 163
7.1.1 Amyotrophic lateral sclerosis: Clinical and genetic features 163
7.1.2 Pathways leading to ALS 164
7.1.3 ALS, a disease of protein misfolding and aggregation 165
7.1.4 Mitochondrial dysfunction in ALS 166
7.2 Misfolded proteins that associate with mitochondria in ALS 167
7.2.1 SOD1, the first ALS protein found in mitochondria 167
7.2.1.1 SOD1 function and dysfunction 167
7.2.1.2 Mutant SOD1 is localized inside mitochondria 167
7.2.1.3 Mutant SOD1 can affect mitochondria from the outside 169
7.2.2 RNA binding proteins: TDP-43 and FUS, unexpected links to mitochondria 170
7.2.3 The ER–mitochondria connection, a pathogenic target in ALS 171
7.2.4 Mitochondrial quality control: VCP and OPTN/TBK1 172
7.2.4.1 VCP and the mitochondrial outer membrane protein degradation systems in ALS\r 172
7.2.4.2 OPTN and TBK1: The selective autophagy pathway of mitochondrial degradation in ALS 174
7.2.5 CHCHD10, the first mitochondrial protein causative of fALS 175
7.3 Conclusions 177
References 177
Chapter 8 Impact of Mitostasis and the Role of the Anti-oxidant Responses on Central Nervous System Disorders 185
8.1 Introduction 185
8.2 Mitostasis in the nervous system 187
8.2.1 Mitochondria dynamics: Fusion, fission, and motility 189
8.2.2 Mitophagy 190
8.2.3 UPRmt: A Mitochondria-specific unfolded protein response 192
8.3 Nrf2/Keap1 signaling pathway 193
8.4 Concluding remarks and perspectives 196
Acknowledgments 197
References 197
Chapter 9 Propagation of Misfolded Proteins in Neurodegeneration: Insights and Cautions from the Study of Prion Disease Prototypes 203
9.1 Introduction 203
9.2 Propagation of PrPSc 208
9.3 Prion strains and species barrier effects 209
9.4 Allelic forms of PrPC and internal species barrier effects for infections 211
9.5 Prion-like properties of other neurodegenerative diseases 213
9.6 Re-purposing inhibitors of prion replication and pathogenic pathways? 216
References 217
Chapter 10 Endoplasmic Reticulum Stress Response in Neurodegenerative Diseases 225
10.1 Introduction 225
10.2 UPRER pathways 226
10.3 Parkinson’s disease 228
10.4 Demyelinating diseases 230
10.5 Amyotrophic lateral sclerosis 232
10.6 Autosomal dominant retinitis pigmentosa 232
10.7 Conclusions 234
References 234
Chapter 11 Proteomic Analysis of Huntingtin-Associated Proteins Provides Clues to Altered Cell Homeostasis in Huntington’s Disease 239
11.1 Introduction 239
11.2 Huntingtin and its various cellular functions 240
11.2.1 HTT associates with proteins involved in RNA metabolism 241
11.2.2 HTT associates with mRNA encoding HTT itself 242
11.3 HEAT repeats in huntingtin 243
11.4 RNA granules are reversible RNA–protein assemblies that may become aggregates 244
11.5 HTT associates with mis-spliced HTT exon1 mRNA 244
11.6 Concluding remarks 245
References 246
Chapter 12 Overcoming the Obstacle of the Blood–Brain Barrier for Delivery of Alzheimer’s Disease Therapeutics 249
12.1 Introduction 249
12.2 RMT strategies for the transport of agents to treat AD 252
12.3 Cell penetrating peptides 258
12.4 Conclusion 259
References 261
Chapter 13 Immunotherapies for Alzheimer’s Disease 267
13.1 Introduction 267
13.2 Aβ immunotherapies 267
13.2.1 Epitopes to target 267
13.2.2 Mechanism of action 269
13.3 Tau immunotherapies 271
13.3.1 Epitopes to target 271
13.3.2 Mechanism of action 272
13.4 Other considerations for Aβ and tau antibody therapies 273
13.5 Imaging studies to assess brain penetration and target engagement of Aβ or tau antibodies as well as associated clearance of aggregates 275
13.6 Conclusions 276
Acknowledgments 276
References 276
Chapter 14 Role of the Microbiome in Polyphenol Metabolite-Mediated Attenuation of β-amyloidand tau Protein Misfolding in Alzheimer’s Disease 281
14.1 Introduction 281
14.2 Grape-derived polyphenols 282
14.3 GDP and protein misfolding in AD 283
14.4 GDP attenuates AD neuropathology while promoting synaptic plasticity 287
14.5 Role of the microbiome in brain GDP bioavailability 293
14.6 Clinical intervention and future directions 298
Acknowledgments 299
References 300
Index 305