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Synthetic Methods in Drug Discovery

Synthetic Methods in Drug Discovery

David C Blakemore | Paul M Doyle | Yvette M Fobian

(2016)

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Book Details

Abstract

Synthetic Methods in Drug Discovery Volume 1 focusses on the hugely important area of transition metal mediated methods used in industry. Current methods of importance such as the Suzuki-Miyaura coupling, Buchwald-Hartwig couplings and CH activation are discussed. In addition, exciting emerging areas such as decarboxylative coupling, and the uses of iron and nickel in coupling reactions are also covered. This book provides both academic and industrial perspectives on some key reactions giving the reader an excellent overview of the techniques used in modern synthesis. Reaction types are conveniently framed in the context of their value to industry and the challenges and limitations of methodologies are discussed with relevant illustrative examples. Edited and authored by leading scientists from both academia and industry, this book will be a valuable reference for all chemists involved in drug discovery as well as postgraduate students in medicinal chemistry.


Contains contributions from many distinguished synthetic chemists andprovides both academic and industrial perspectiveson key reactions giving the readeranexcel-lent overview of the techniques used in modernsynthesis.
Prof. Gianluca Sbardella
This book is a must-have handbook and a highly valuable reference for all chemists involved in drug discovery as well as postgraduate students in medicinal chemistry.
Prof. Gianluca Sbardella
David Blakemore has spent his entire career in the pharmaceutical industry. Following his post-docs in Cambridge and Paris, he joined Warner-Lambert as a Group Leader in the Discovery Chemistry group.  In 2001, he joined Pfizer in Sandwich and is currently the Synthesis Lead for the World-Wide Medicinal Chemistry Group at Pfizer Neusentis. Part of David’s role is in liaising with academics to highlight key areas of chemistry that could be of real value to the pharmaceutical industry and to develop interactions in those areas.
Paul Doyle has spent his entire career at the interface of chemistry and biology in the service of drug discovery. After his first degree in chemistry at Oxford, Paul completed his D.Phil. at the University of Sussex studying bio-organic synthetic chemistry. He spent a 15-year early career in a wide variety of therapeutic discovery programmes at the Wellcome Foundation before establishing one of the first UK discovery CROs, Biofocus. In 2008, Paul joined Peakdale as CEO.
Yvette Fobian has spent the majority of her career in the pharmaceutical industry. After completing her PhD and spending a year in Monsanto’s Corporate Research, she joined the Medicinal Chemistry Group in Searle/Monsanto in 1997 and ultimately Pfizer in 2003 following a series of mergers and acquisitions. In her most current role, Yvette is in an excellent position to see first-hand the needs and impact of synthetic enablement for both small and large scale delivery within the discovery team.

Table of Contents

Section Title Page Action Price
Cover Cover
Contents ix
Preface vii
Chapter 1 Suzuki–Miyaura Coupling 1
1.1 Introduction 1
1.2 The Catalytic Cycle of the SMC 3
1.3 The Impact of the Ligand 4
1.4 Electron-rich, Sterically Hindered Phosphine Ligands 6
1.5 N-Heterocyclic Carbene Ligands 9
1.6 The Boronate Species 10
1.7 Base and Solvent 19
1.8 Optimal Reaction Conditions 20
1.9 Examples of Process-scale SMC Reactions 23
1.10 Side Reactions in SMC Reactions 29
1.10.1 Oxidation and Homo-coupling 29
1.10.2 Protodeboronation 32
1.11 SMC Reactions of Dihalogenated Aromatic Systems 51
1.12 SMC Reactions of Aryl Tosylates, Mesylates and Diazonium Species 58
1.13 Generation of Vinyl, Cyclopropyl and Benzyl Derivatives 59
1.14 Conclusion 62
References 63
Chapter 2 Negishi Coupling 70
2.1 Introduction 70
2.2 Mechanism 71
2.3 Formation of Organozinc Reagents 72
2.4 Applications in Drug Discovery 74
2.4.1 sp3–sp3 Carbon Bond Formation 75
2.4.2 sp3–sp2 Carbon Bond Formation 75
2.4.3 sp2–sp2 Carbon Bond Formation 82
2.5 Conclusion 99
References 100
Chapter 3 Hiyama Coupling 104
3.1 Introduction 104
3.2 Development of the Hiyama Coupling Reaction 105
3.3 Mechanistic Considerations 106
3.4 Fluoride-free Hiyama Coupling 109
3.5 Hiyama-Denmark Coupling 114
3.6 Summary 119
References 120
Chapter 4 Sonogashira Coupling 122
4.1 Introduction 122
4.2 Development of the Sonogashira Reaction 123
4.3 Mechanistic Aspects of the Reaction 124
4.3.1 Typical Reaction Conditions 126
4.4 Utility of the Sonogashira Reaction 126
4.5 The Glaser–Hay Coupling Reaction 136
4.6 The Copper-free Sonogashira Coupling Reaction 136
4.7 Summary 140
Acknowledgments 141
References 141
Chapter 5 Heck Coupling 143
5.1 Introduction 143
5.2 Intermolecular Heck Couplings 148
5.3 Intramolecular Heck Reactions 158
5.4 Conclusion 165
References 166
Chapter 6 Palladium- and Copper-catalysed C–N Cross-coupling in Drug Discovery 170
6.1 Introduction 170
6.1.1 Overview of Pd-catalysed C–N Cross-coupling 172
6.1.2 Overview of Cu-catalysed C–N Cross-coupling 178
6.2 Primary and Secondary Aliphatic Amines 180
6.3 Anilines and Amino Heterocycles 197
6.4 Amides, Sulfonamides, and Other Weak N–H Nucleophiles 207
6.5 Azoles 214
6.6 Ammonia, Hydrazine, and their Surrogates 222
6.7 Summary and Outlook 229
References 232
Chapter 7 Chan–Lam Coupling Reaction: Copper-promoted C–Element Bond Oxidative Coupling Reaction with Boronic Acids 242
7.1 General Introduction 242
7.2 C–N Oxidative Coupling with Arylboronic Acids 244
7.2.1 Recent C–N Oxidative Coupling with Arylboronic Acids 244
7.2.2 Intramolecular C–N Oxidative Coupling 251
7.2.3 Recent Pharmaceutical Applications 252
7.3 C–O Oxidative Coupling with Arylboronic Acids 256
7.3.1 Intramolecular C–O Oxidative Coupling 259
7.3.2 Pharmaceutical Applications 260
7.4 C–N and C–O Oxidative Coupling with Alkenyl, Alkyl and Alknylboronic Acids 261
7.4.1 Boron Reagents 263
7.5 Other C–Element Oxidative Coupling (C–S, C–P, C–F, C–Cl, C–Br, C–I, C–Se, C–Te, C–F, C–C, C–H) 264
7.6 Mechanistic Studies 266
7.7 Future and Conclusions 268
Acknowledgments 269
References 269
Chapter 8 C–H Activation Approaches to Molecules 274
8.1 Introduction 274
8.2 C–H Arylation 275
8.2.1 Intermolecular C(sp2)–H Arylation 277
8.2.2 Intramolecular C(sp2)–H Arylation 302
8.2.3 C(sp3)–H Arylation 305
8.3 C–H Alkenylation and Alkylation 307
8.3.1 C(sp2)–H Alkenylation and Alkylation 307
8.3.2 C–H Insertion of Carbenes and Metal Carbenoids 314
8.4 C–H Amination 316
8.5 C–H Oxidation 330
8.6 C–H Halogenation 337
8.7 C–H Borylation 349
8.7.1 Borylation of Arene C–H Bonds 350
8.7.2 Borylation of Heteroarene C–H Bonds 356
8.7.3 Directed C–H Borylation 361
8.8 Summary and Outlook 372
References 374
Chapter 9 Palladium-catalyzed Decarboxylative Couplings 384
9.1 Introduction 384
9.2 Redox-neutral Decarboxylative Biaryl Syntheses 386
9.2.1 Decarboxylative Couplings with Bimetallic Catalysts 387
9.2.2 Decarboxylative Couplings with Pd-based Systems 399
9.3 Decarboxylative Direct Arylation Processes 402
9.4 State-of-the-Art in Decarboxylative Couplings 403
9.5 Conclusions 404
Abbreviations 405
Acknowledgments 405
References 405
Chapter 10 New Frontiers with Transition Metals 411
10.1 Introduction 411
10.3 Iron Catalysed Synthesis of Biaryl Compounds 421
10.4 Iron Catalysed Oxidative Functionalisation of Amines 423
10.5 Nickel Transition Metal Catalysis 427
10.6 Transition Metal Catalysed C–H C(sp2)–C(sp2) Coupling 429
10.7 Transition Metal Catalysed Direct C–H C(sp2)-C(sp2) Coupling 433
10.8 Conclusion 439
References 439
Subject Index 443