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SPEC - The Molecular Basis of Cancer 4e E-Book (12-Month Access)

SPEC - The Molecular Basis of Cancer 4e E-Book (12-Month Access)

John Mendelsohn | Peter M. Howley | Mark A. Israel | Joe W. Gray | Craig B. Thompson

(2014)

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Book Details

Abstract

Stay current with the latest discoveries in molecular and genomic research. Sweeping revisions throughout include eight brand-new chapters on: Tumor Suppressor Genes; Inflammation and Cancer; Cancer Systems Biology: The Future; Biomarkers Assessing Risk of Cancer; Understanding and Using Information About Cancer Genomes; The Technology of Analyzing Nucleic Acids in Cancer; Molecular Abnormalities in Kidney Cancer; and Molecular Pathology.

Table of Contents

Section Title Page Action Price
Front Cover Cover
IFC IFC
The Molecular Basis of Cancer iii
Copyright iv
Dedication v
Contributors vii
Preface xix
Contents xxi
I Carcinogenesis and Cancer Genetics 1
1 - Cancer: A Genetic Disorder 3
The Discovery of Cellular Oncogenes 4
Multistep Tumorigenesis 6
The Discovery of Tumor Suppressor Genes 8
Guardians of the Genome 11
Epigenetic Mechanisms Leading to Loss of Gene Function 12
Immortalized Proliferation 13
Non-genetic Mechanisms Accelerating Multistep Tumor Progression 14
Invasive and Metastatic Behaviors 14
Other Phenotypes of Neoplasia 16
References 18.e1
2 - Oncogenes and Signal Transduction 19
Signaling: An Overview 19
Oncogenes 20
Signal Transduction by Protein Tyrosine Kinase Receptors 21
Signaling Pathways of Tyrosine Kinase Receptors 22
Oncogenes and Survival Signaling 26
Cytokine Receptor Signaling 27
Neurotransmitters 28
Wnt Signaling 30
Hedgehog/Patched Signaling 30
Implications for Cancer Therapy 31
References 34.e1
3 - Tumor Suppressor Genes 35
Introduction 35
Complications of Tumor Suppression 37
Interconnecting the pRB, p53, and mTORC1 Pathways 39
Epigenetic Modifications and Tumor Suppression 43
Conclusions 45
References 46.e1
4 - DNA Repair Pathways and Human Cancer 47
Introduction 47
The Spectrum of DNA Damage 47
The Systematic Study of DNA Repair 48
DNA Repair and the DNA Damage Response 56
Prognostic and Predictive DNA Repair Biomarkers in Cancer Treatment 60
The Development of New DNA Repair Biomarkers 62
Multiple Mechanisms of Cisplatin Resistance 63
Conclusion 64
References 66.e1
5 - Epigenetics and Cancer 67
The Molecular Basis for Epigenetic Control of Gene Expression 67
Abnormalities of DNA Methylation and Chromatin Organization in Cancer: The Cancer “Epigenome” 69
Translational Implications of Epigenetic Changes in Cancer 72
References 78.e1
6 - Infectious Agents and Cancer 79
Overview of Cancer and Infectious Agents 79
Viruses and Cancer 79
Bacteria and Cancer 98
Parasites and Cancer 99
Perspectives 99
References 102.e1
7 - Environmental Carcinogenesis 103
Introduction to Cancer and the Environment 103
Causes of Cancer 104
Classes and Types of Carcinogens 107
Mechanisms of Chemical Carcinogenesis 115
Endogenous Defense Systems against Chemical Carcinogenesis 119
Cancer Prevention 124
Summary and Conclusions 127
References 128.e1
8 - Animal Models: Flies, Fish, and Yeast 129
Why Use a Simple Model Organism 129
Genetic Conservation and Synteny 129
Forward Genetics, Reverse Genetics, and Transgenesis 130
Drug Screens 133
Conditional Models 134
Yeast 134
Flies 138
Fish 141
Conclusion 143
References 144.e1
9 - Genetic Mouse Models of Cancer 145
Basis for Mouse Models of Cancer 145
Mouse Models of Cancer 145
Applications of Mouse Models to Cancer Biology 149
Future Directions of Cancer Models 151
Conclusions 152
References 154.e1
II Cancer Biology 155
10 - Cancer Stem Cells and the Microenvironment 157
Identification of Cancer Stem Cells 157
Cytokine Networks Can Promote Cancer Stem Cell Self-Renewal 161
Summary 162
References 164.e1
11 - Regulation of the Cell Cycle 165
Basic Principles of Cell Cycle Progression 165
The Cyclin-Dependent Kinases 165
Posttranslational Regulation of CDKs 165
Transcriptional Regulation by the E2F Transcription Factors 168
G1 Regulation/Restriction Point Control 169
Regulation of DNA Replication (S Phase) 170
G2/M Transition Regulation 171
Regulated Proteolysis in Cell Cycle Control 173
Deregulation of G1 Restriction Point Control in Cancer 176
Targeting the Cell Cycle as a Therapeutic Modality 176
Conclusions 177
References 178.e1
12 - Cell Growth 179
What Is Cell Growth 179
Biochemical Pathways That Control Cell Growth 180
Beyond Cell Growth: Does mTOR Regulate Organ and Organism Growth 186
Key References 190
References 190.e1
13 - The Metabolism of Cell Growth and Proliferation 191
Why Is Metabolism Important to an Understanding of Cancer 191
The Metabolic Requirements of Cell Proliferation 191
Regulation of Cell Metabolism 193
The Metabolic Profile of Cancer Cells 194
Genetic Mechanisms Driving Cancer Cell Metabolism 201
Clinical Implications of Metabolic Transformation 205
References 208.e1
14 - Apoptosis, Necrosis, and Autophagy 209
The Ways Cells Die 209
Apoptosis 211
Necrosis 216
Autophagy 220
References 228.e1
15 - Cellular Senescence 229
Biochemical and Morphological Characteristics of Senescent Cells 229
Replicative Senescence and the Hayflick Limit 230
Conclusions and Perspectives 236
References 238.e1
16 - The Role of the Microenvironment in Tumor Initiation, Progression, and Metastasis 239
Promoting Microenvironments 240
Suppressive Microenvironments 241
The Tumor Organ 242
The Frontiers of the Microenvironment 250
Acknowledgements 253
References 256.e1
17 - Tumor Angiogenesis 257
Vascular Development 257
Critical Signaling Factors—Targets for Therapy 260
Targeting Tumor Angiogenesis in Patients 264
Remaining Challenges 266
References 268.e1
18 - Invasion and Metastasis 269
Generation of a Metastatic Cell 269
Tumor Invasion 270
Adhesion 270
Matrix Degradation 271
Motility 272
Coordination of Cancer Invasion 273
The Metastatic Cascade 273
Intravasation 274
Transport 274
Arrest 275
Extravasation 275
Colonization 275
Organ Selectivity of Metastasis 276
Metastatic Progression 277
Colonization and Interactions with the Tumor Microenvironment 280
References 284.e1
19 - Inflammation and Cancer 285
Introduction 285
Hematopoiesis and the Immune System 285
Chronic Inflammation and Tumor Incidence 285
Inflammation and the Metastatic Cascade 287
Immune Cells in Cancer 288
Nonhematopoietic Stromal Cell Types in the Tumor Microenvironment 292
Summary 293
Key References 293
References 296.e1
20 - Cancer Systems Biology: The Future 297
Reverse Engineering Regulatory Networks 300
Interrogating Pathways and Networks 304
Using Regulatory Networks to Elucidate Drug Activity 306
Recent Trends and Future Perspectives 307
The Technologies of Cancer Systems Biology 308
References 214.e1
III Molecular Pathology and Diagnostics 315
21 - Biomarkers for Assessing Risk of Cancer 317
Biomarkers of Exposure 317
Biomarkers of Effect 319
Biomarkers of Susceptibility 320
Integrative Multifactor Risk Prediction 326
Conclusion 327
References 330.e1
22 - Protein Biomarkers for Detecting Cancer: Molecular Screening 331
Defining “Normal” 332
Completeness of Shotgun Biomarker Discovery Proteomics 335
MS Protein Profiling 336
The Proteomics Toolbox for Biomarker Discovery and Validation 337
Example: Biomarker Development Using a Mouse Model of Human Breast Cancer 340
Conclusions 341
References 346.e1
23 - The Technology of Analyzing Nucleic Acids in Cancer 347
Introduction to Next-Generation Sequencing 347
Challenges to NGS Analysis of Cancer Nucleic Acids 349
Applications of NGS to Study and Analyze Nucleic Acids 351
Conclusions 354
References 356.e1
24 - Understanding and Using Information about Cancer Genomes 357
The Emerging Cancer Genome Landscape 357
Functional Assessment of Cancer Genomes 359
Clinical Applications 364
Summary 367
References 368.e1
25 - High-Content Analysis with Cellular and Tissue Systems Biology: A Bridge between Cancer Cell Biology and Tissue-Based Diagnostics 369
High-Content Analysis (HCA) 369
Cellular Systems Biology in Cancer Research and Drug Discovery 373
Tissue Systems Biology in Cancer Diagnostics/Prognostics 376
Conclusion and Outlook 386
References 392.e1
IV Molecular Pathogenesis and Therapeutic Targets for Specific Cancers 393
26 - Molecular Genetics of Acute Lymphoblastic Leukemia 395
Introduction 395
Prognostic Factors 395
Overview of Molecular Genetics of ALL 395
Abnormalities of Chromosome Number (Ploidy) 396
Genetic Abnormalities in ALL 396
Clinical Implications of Genetic Lesions in ALL 405
Conclusions 405
References 406.e1
27 - Molecular Biology of Childhood Neoplasms 407
Retinoblastoma 407
Wilms Tumor 408
Tumors of the Peripheral Nervous System: Neuroblastoma 409
Rhabdomyosarcoma 411
Childhood Sarcomas: Osteosarcoma 412
Cancer Predisposition Syndromes 413
Molecular and Clinical Surveillance for Cancer Predisposition in Children 418
References 420.e1
28 - Biology of Adult Myelocytic Leukemia and Myelodysplasia 421
Introduction 421
Acute Myeloid Leukemia 421
Molecular Pathogenesis of AML 422
Mutations Altering Signal Transduction 425
Myelodysplastic Syndromes 428
Concluding Remarks 431
References 431
29 - Lymphoma 433
B- and T-Lymphocyte Development 434
Pathogenesis of Diffuse Large B-Cell Lymphoma 436
Molecular Pathogenesis of Follicular Lymphoma 442
Pathogenesis of Mantle-Cell Lymphoma 445
Molecular Pathogenesis of the Peripheral T-Cell Lymphomas 450
Translating Molecular Pathogenesis into Novel Treatment Platforms 452
Future Directions 452
References 454.e1
30 - Multiple Myeloma 455
Mutated Genes in Multiple Myeloma 456
Final Remarks 463
References 466.e1
31 - Molecular Mechanisms of Esophageal Cancer 467
Introduction 467
Histology 467
Etiology and Molecular Mechanisms of Esophageal Cancer 467
Chronic Inflammation and Esophageal Cancer 468
Environmental Carcinogenic Exposures and Esophageal Cancer 470
References 474.e1
32 - Molecular Basis of Lung Cancer 475
Molecular Epidemiology and Etiology 475
Genomics: Tools for Identification, Prediction, and Prognosis 476
Epigenetic Changes in Lung Carcinogenesis 479
Oncogenes, Tumor Suppressor Genes, and Signaling Pathways in Lung Cancer 482
Translation of Molecular Data to the Clinic: Rationale-Based Targeted Therapy 488
References 490.e1
33 - The Molecular Pathogenesis of Head and Neck Cancer 491
Epidemiology and Clinical Considerations 491
Oncogenic Progression of HNSCC 491
Molecular Pathogenesis of HNSCC: Interfacing Genomic Pathways 493
Cell Cycle and Proliferation: TP53/CDKN2A/RB/CCND1/TERT 493
Apoptosis and Survival: EGFR/RAS-MAPK/PIK3CA-AKT/CASP8 495
Differentiation and Mesenchymal Transition: NOTCH/TP63 496
Invasion and Metastasis: MMP/TGFβ-SMAD/NFκB/CSMD/VEGF 497
Future Directions 498
References 498.e1
34 - Colon and Rectal Cancer 499
Epidemiology 499
Recurrent Somatic Alterations in Colorectal Cancer 507
Multistep Genetic Models of Colorectal Tumor Development 510
Clinical Applications of Molecular Genetic Insights 511
Summary and Future Directions 512
References 514.e1
35 - Molecular Pathogenesis of Pancreatic Adenocarcinoma 515
Molecular Alterations in Pancreatic Cancer 515
Conclusion 521
References 522.e1
36 - The Molecular Biology of Breast Cancer 523
Molecular Biology of Breast Cancer Initiation and Progression 523
Pathophysiology and Risk Factors 524
Environment 524
Molecular Subtyping 524
Molecular Basis of Breast Cancer 527
Conclusion and Outlook 530
Acknowledgments 530
References 530.e1
37 - Molecular Pathogenesis of Ovarian Cancer 531
Cellular and Molecular Characteristics of Ovarian Cancer Cells 532
Immortalization 535
Genomic Abnormalities in Sporadic Ovarian Cancers 535
Interaction of Ovarian Cancer Cells with the Microenvironment 541
Immunologic and Inflammatory Factors 544
Conclusion 545
References 548.e1
38 - Molecular Basis of Prostate Cancer 549
Pathology 549
Molecular Pathology 550
Polycomb Group Transcriptional Repression 556
Future Directions 558
References 560.e1
39 - Molecular Abnormalities in Kidney Cancer 561
Kidney Cancer Histopathology 561
von Hippel-Lindau Disease 562
Common Somatic Alterations in Clear Cell Renal Carcinoma 566
Inactivation of Tumor Suppressor Genes 566
Multistep Genetic Models of Clear Cell Renal Carcinoma 568
Common Somatic Alterations in Non–Clear Cell Renal Carcinoma 568
Clinical Applications of Molecular Insights 569
Therapy (Clear Cell) 569
Therapy (Non–Clear Cell) 570
Prognostic and Predictive Markers 570
Summary and Future Directions 570
References 572.e1
40 - The Biology of Primary Brain Tumors 573
Hereditary Syndromes and Central Nervous System Oncogenesis 573
Molecular Biology of the Most Common Primary Central Nervous System Tumors 574
Molecular Pathophysiology of Primary Brain Tumors 578
Therapeutic Resistance of Primary Central Nervous System Tumors 579
Future Directions/Perspective 579
References 580.e1
41 - Epithelial Skin Cancer 581
Skin Cancer Research Has Helped Define the Biology of Cancer Pathogenesis 581
The Molecular Origin of Skin Tumors Is Revealed by Hereditary Syndromes 581
Basal Cell Carcinoma 583
Cutaneous Squamous Cell Carcinoma 584
Defining the Cell of Origin for Cutaneous Cancers 586
Importance of the Microenvironment in Cutaneous Cancer 588
Perspective 588
References 590.e1
42 - Molecular Basis for Treating Cutaneous Molecular 591
Introduction 591
Melanoma Background 591
Melanoma Pathology 592
Melanoma Therapy and Molecular Targets 592
Epigenetic Pathways: MicroRNA 596
Conclusions 598
References 600.e1
43 - Thyroid Cancer 601
Differentiated Thyroid Carcinoma 601
Medullary Thyroid Carcinoma 604
Other Molecular Mechanisms Active in Thyroid Carcinoma 605
Therapeutic Targeting 606
Future Directions 606
References 608.e1
44 - Soft Tissue Sarcomas 609
Introduction 609
Synovial Sarcoma 609
Atypical Lipomatous Tumor/Well-Differentiated Liposarcoma 612
Gastrointestinal Stromal Tumor 613
Conclusion 616
References 618.e1
V Molecular Basis of Cancer Therapy 619
45 - From Bench to Bedside with Targeted Therapies 621
Drug Development 621
Next Steps in Drug Development 626
Conclusion 633
References 634.e1
46 - Cancer Therapeutics 635
Molecular Basis of the Therapeutic Index 635
Drugs Affecting Growth Factors and Growth Factor Receptors 639
Drugs That Target Cancer Stem Cells 643
Drugs That Target the Immune System 643
Drugs That Alter Nucleic Acid Synthesis and Function 643
Drugs that Affect the Mitotic Apparatus 646
Drugs That Affect Protein Synthesis and Degradation 648
References 650.e1
47 - Natural and Acquired Resistance to Cancer Therapies 651
Pharmacologic and Physiologic Causes of Treatment Failure 651
Cellular Mechanisms of Drug Resistance 652
References 660.e1
48 - Phase I Trials Today 661
Introduction 661
Types of Phase I Clinical Trials 661
Phase I Cancer Clinical Trial Designs 664
Statistical Considerations of Phase I Studies 667
Pharmacodynamic Markers in Phase I Studies: Tissue Analysis 667
Recent Therapeutic Successes with Phase I Trials 670
Challenges and Perspectives 671
Imaging Techniques in Phase I Studies 672
Conclusion 673
References 676.e1
49 - Pharmacogenomics 677
Introduction 677
Pharmacogenomics in Oncology 677
Genotyping and Phenotyping 678
Pharmacogenomic Discovery Approaches 678
Clinical Relevance of Pharmacogenomic Findings During Implementation 681
Conclusions 681
References 682.e1
50 - Monoclonal Antibodies for the Treatment of Cancer 683
Introduction 683
Antibody Structure and Function 683
Development of Monoclonal Antibodies 683
Mechanisms of Action of Anti-Cancer Antibodies 684
Antibodies Targeting Solid Tumors 687
Antibodies Targeting Hematological Malignancies 688
Antibodies Targeting Immune Cells 689
Antibodies Targeting Angiogenesis 690
Antibody Engineering 691
Summary and Future Directions 692
References 694.e1
51 - Cancer and the Cellular Immune Response 695
Introduction 695
Innate Recognition of Microbial Pathogens by Toll-Like Receptors 696
The Nature of Antitumor Immunity 699
Cancer Vaccines, Cytokines, and Immunotherapy 699
Adoptive Immunotherapy of Cancer 701
Immune Regulatory Cells and Molecules in Human Cancer 703
Immune Checkpoint Blockade 704
Future Cancer Immunotherapies Will Use Basic Principles of Cellular Immunity 706
References 708.e1
52 - Cancer Immunotherapy with Vaccines and Checkpoint Blockade 709
Cancer Antigens—the Difference between Tumor and Self 710
Evidence Pro and Con for Immune Surveillance of Cancer 712
Immune Tolerance and Immune Evasion—the Immune Hallmarks of Cancer 713
Inhibition of Antitumor Immunity by Regulatory T Cells 715
Therapeutic Cancer Vaccines 717
Evidence of Clinical Activity for PD-1 Blockade 731
Summary 734
References 738.e1
53 - Interferons 739
Introduction 739
Induction, Genes, Receptors, and Signaling 739
Mechanisms of Antitumor Action of Induced Genes 744
Antitumor Effects in Humans 750
Perspective 751
References 752.e1
54 - Gene Therapy and Oncolytic Viruses 753
Introduction 753
Killing Cancer Cells by Gene Replacement and Gene Knockout 753
Genes That Boost the Immune System 759
Naturally Occurring Viruses That Replicate Selectively in Cancer Cells 760
Viruses Engineered to Replicate Selectively 761
Challenges and Future Perspective 763
Conclusion 765
References 768.e1
55 - RNA as a Therapeutic Molecule 769
Cancer as a Genetic Disease of Protein-Coding Genes and Noncoding RNAs 769
Main Types of Therapeutic RNA Molecules 771
In Search of the Right Way and the Right Type of Delivery 775
A Strategy for Using RNA as Therapeutic Molecules 775
References 778.e1
56 - Heat Shock Protein 90 and the Proteasome: Housekeeping Proteins That Are Also Molecular Targets for Cancer Therapy 779
Introduction 779
Hsp90: a Chaperone of Cancer 779
The Proteasome as an Anticancer Molecular Target 783
Why Are Tumor Cells Uniquely Sensitive to Hsp90 and Proteasome Inhibition 785
Conclusion 786
References 788.e1
57 - Hematopoietic Growth Factors and Cytokines 789
Erythropoietin 789
Granulocyte-Macrophage Colony-Stimulating Factor 793
Granulocyte Colony-Stimulating Factor 793
Macrophage Colony-Stimulating Factor 794
Stem-Cell Factor 794
Thrombopoietin 794
Interleukin-1 797
Interleukin-2 797
Interleukin-3 798
Interleukin-4 and Interleukin-13 799
Interleukin-5 799
Interleukin-6 799
Interleukin-7 799
Interleukin-8 800
Interleukin-9 800
Interleukin-10 800
Interleukin-11 801
Interleukin-12 801
Interleukin-15 802
Interleukin-16 802
Interleukin-17 802
Interleukin-18 802
Interleukin-19 803
Interleukin-20 803
Interleukin-21 803
Interleukin-22 804
Interleukin-23 804
Interleukin-24 804
Interleukin-25 805
Interleukin-26 805
Interleukin-27 805
Interleukin-28 and Interleukin-29 805
Interleukin-31 805
Interleukin-32 805
Interleukin-33 806
Interleukin-35 806
Interleukin-36 806
Interleukin-37 806
Interleukin-38 807
Conclusion 807
References 808.e1
58 - Cancer Chemoprevention 809
Molecular-Targeted Prevention 809
Biomarker Cancer Risk Models 815
Chemoprevention Trials 816
Conclusion 821
References 824.e1
59 - Molecular Pathology 825
Processing Cancer Specimens for Microscopic Evaluation 825
Special Stains for Evaluating Cancer Tissues 825
Preparing Nucleic Acids from Cancer Specimens 827
Assays for Single Genes or Single Mutations 828
Multiplexed Approaches to Cancer Genotyping 830
Next-Generation DNA Sequencing 832
Future Directions 834
References 834.e1
Index 835
IBC IBC